SRX7691566
GSM4299884: mTECs from Fezf2-3Flag KI mice IgG ChIP 2; Mus musculus; ChIP-Seq

Sample information curated by ChIP-Atlas

Antigen

Antigen Class
Input control
Antigen
Input control

Cell type

Cell type Class
Others
Cell type
Thymic epithelial cells
NA
NA

Attributes by original data submitter

Sample

source_name
mTECs
strain
C57BL/6
genotype/variation
Fezf2-3Flag_KI
cell type
TECs
chip antibody
IgG (control)

Sequenced DNA Library

library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP
library_construction_protocol
Not provided

Sequencing Platform

instrument_model
Illumina HiSeq 2500

Where can I get the processing logs?

Read processing pipeline log

mm10

Number of total reads
69376373
Reads aligned (%)
91.5
Duplicates removed (%)
14.3
Number of peaks
644 (qval < 1E-05)

mm9

Number of total reads
69376373
Reads aligned (%)
91.3
Duplicates removed (%)
14.3
Number of peaks
708 (qval < 1E-05)

Base call quality data from DBCLS SRA