SRX7691563
GSM4299881: mTECs from Fezf2-3Flag KI mice anti Flag ChIP 1; Mus musculus; ChIP-Seq

Sample information curated by ChIP-Atlas

Antigen

Antigen Class
TFs and others
Antigen
Epitope tags

Cell type

Cell type Class
Others
Cell type
Thymic epithelial cells
NA
NA

Attributes by original data submitter

Sample

source_name
mTECs
strain
C57BL/6
genotype/variation
Fezf2-3Flag_KI
cell type
TECs
chip antibody
anti-Flag tag

Sequenced DNA Library

library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP
library_construction_protocol
Not provided

Sequencing Platform

instrument_model
Illumina HiSeq 2500

Where can I get the processing logs?

Read processing pipeline log

mm10

Number of total reads
77986875
Reads aligned (%)
90.7
Duplicates removed (%)
16.2
Number of peaks
921 (qval < 1E-05)

mm9

Number of total reads
77986875
Reads aligned (%)
90.4
Duplicates removed (%)
16.1
Number of peaks
1018 (qval < 1E-05)

Base call quality data from DBCLS SRA