Sample information curated by ChIP-Atlas

Antigen

Antigen Class
Input control
Antigen
Input control

Cell type

Cell type Class
Embryo
Cell type
Embryonic brains
NA
NA

Attributes by original data submitter

Sample

source_name
E14.5 cerebral cortices
strain
C57BL/6
developmental stage
E14.5
tissue
brain
brain region
cerebral cortex
antibody
none (input)

Sequenced DNA Library

library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP
library_construction_protocol
Brain tissue were fixed 45' in PBS containing 2mM Di-succinimidyl-glutarate (DSG). After washing with PBS, protein-DNA-interactions were fixed by 10min incubation in 1% formaldehyde at room temperature; chromatin was fragmented to the desidered lenght with Diagenode's Bioruptor, according to manufacturer's instructions. Library construction have been performed with ChIP-Seq DNA Sample Prep Kit, according to manufacturer's instructions.

Sequencing Platform

instrument_model
Illumina Genome Analyzer IIx

mm10

Number of total reads
55877740
Reads aligned (%)
84.2
Duplicates removed (%)
25.3
Number of peaks
790 (qval < 1E-05)

mm9

Number of total reads
55877740
Reads aligned (%)
84.0
Duplicates removed (%)
25.3
Number of peaks
910 (qval < 1E-05)

Base call quality data from DBCLS SRA