Sample information curated by ChIP-Atlas

Antigen

Antigen Class
ATAC-Seq
Antigen
ATAC-Seq

Cell type

Cell type Class
Blood
Cell type
T cells
NA
NA

Attributes by original data submitter

Sample

source_name
Control AT2
strain background
C57BL/6
tissue
Lung
cell type
lung pogenitor cells
cell subtype
Alveolar type 2 progenitor cells (AT2)

Sequenced DNA Library

library_strategy
ATAC-seq
library_source
GENOMIC
library_selection
other
library_construction_protocol
The ATAC-seq assay was performed on 50,000 FACS-purified Purified cells were lysed in ATAC lysis buffer for 5 min to get nuclei and then transposed with Tn5 transposase (Illumina) for 30 min. Fractionated DNA was used for amplification and library preparation Illumina, Illumina HiSeq 4000, 150 bp-paired end sequencing

Sequencing Platform

instrument_model
Illumina HiSeq 4000

mm10

Number of total reads
75657505
Reads aligned (%)
39.5
Duplicates removed (%)
59.6
Number of peaks
10220 (qval < 1E-05)

mm9

Number of total reads
75657505
Reads aligned (%)
39.5
Duplicates removed (%)
59.6
Number of peaks
10199 (qval < 1E-05)

Base call quality data from DBCLS SRA