Sample information curated by ChIP-Atlas

Antigen

Antigen Class
ATAC-Seq
Antigen
ATAC-Seq

Cell type

Cell type Class
Neural
Cell type
Medium spiny neuron-like
NA
NA

Attributes by original data submitter

Sample

source_name
medium spiny neuron-like
tissue
medium spiny neuron-like
diagnosis
Control patient

Sequenced DNA Library

library_strategy
ATAC-seq
library_source
GENOMIC
library_selection
other
library_construction_protocol
DNA was purified from iMNs using the DNeasy Blood & Tissue Kit (Qiagen), according to the manufacturer's instructions (as described in pubmed 27146274) DNA were prepared for high-throughput sequencing according to Illumina's instructions and sequenced on an Illumina platform following the manufacturer's standard protocol (as described in pubmed 27146274)

Sequencing Platform

instrument_model
Illumina HiSeq 2000

hg38

Number of total reads
41351609
Reads aligned (%)
93.9
Duplicates removed (%)
32.1
Number of peaks
25736 (qval < 1E-05)

hg19

Number of total reads
41351609
Reads aligned (%)
93.3
Duplicates removed (%)
33.0
Number of peaks
25549 (qval < 1E-05)

Base call quality data from DBCLS SRA