Sample information curated by ChIP-Atlas

Antigen

Antigen Class
Input control
Antigen
Input control

Cell type

Cell type Class
Adipocyte
Cell type
Brown adipocytes
NA
NA

Attributes by original data submitter

Sample

source_name
brown adipose tissue
strain
C57BL/6
age
8 weeks
antibody
none

Sequenced DNA Library

library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP
library_construction_protocol
Lysates were clarified from sonicated nuclei and PPARs-DNA complexes were isolated with antibody. Extracted DNA (1-5ng) was used to prepare sequencing libraries using the NEBNext ChIP-seq library preparation master mix set for Illumina (New England Biolabs, E6240S). The library was analyzed by Agilent Bioanalyzer and was sequenced by the Functional Genomics Core of the Penn Diabetes Research Center by using the Illumina HiSeq2500 (single-end 50bp)

Sequencing Platform

instrument_model
Illumina HiSeq 2500

mm10

Number of total reads
32084637
Reads aligned (%)
98.1
Duplicates removed (%)
9.9
Number of peaks
6958 (qval < 1E-05)

mm9

Number of total reads
32084637
Reads aligned (%)
97.9
Duplicates removed (%)
9.9
Number of peaks
6964 (qval < 1E-05)

Base call quality data from DBCLS SRA