Sample information curated by ChIP-Atlas

Antigen

Antigen Class
TFs and others
Antigen
Pparg

Cell type

Cell type Class
Adipocyte
Cell type
Brown adipocytes
NA
NA

Attributes by original data submitter

Sample

source_name
brown adipose tissue
strain
C57BL/6
age
8 weeks
antibody
PPARg(Proteintech 16643-1-AP)

Sequenced DNA Library

library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP
library_construction_protocol
Lysates were clarified from sonicated nuclei and PPARs-DNA complexes were isolated with antibody. Extracted DNA (1-5ng) was used to prepare sequencing libraries using the NEBNext ChIP-seq library preparation master mix set for Illumina (New England Biolabs, E6240S). The library was analyzed by Agilent Bioanalyzer and was sequenced by the Functional Genomics Core of the Penn Diabetes Research Center by using the Illumina HiSeq2500 (single-end 50bp)

Sequencing Platform

instrument_model
Illumina HiSeq 2500

mm10

Number of total reads
68024756
Reads aligned (%)
93.0
Duplicates removed (%)
44.3
Number of peaks
49724 (qval < 1E-05)

mm9

Number of total reads
68024756
Reads aligned (%)
92.9
Duplicates removed (%)
44.3
Number of peaks
49725 (qval < 1E-05)

Base call quality data from DBCLS SRA