ChIP-Atlas: SRX7643546

Sample information curated by ChIP-Atlas

Antigen

Antigen Class: ATAC-Seq
Antigen: ATAC-Seq

Cell type

Cell type Class: Embryo
Cell type: Embryonic kidney
NA: NA

Attributes by original data submitter

Sample

source_name: Embryonic Kidneys
developmental stage: E16.5
genotype: Ezh1-/- ; Six2TGC
strain: 129 * C57BL/6

Sequenced DNA Library

library_strategy: ATAC-seq
library_source: GENOMIC
library_selection: other
library_construction_protocol: Corces et al., 2017 Buenrostro et al., 2013 Omni-ATAC

Sequencing Platform

instrument_model: NextSeq 550

Where can I get the processing logs?

Read processing pipeline log

mm10

Number of total reads: 27652114
Reads aligned (%): 81.5
Duplicates removed (%): 8.4
Number of peaks: 30410 (qval < 1E-05)

mm9

Number of total reads: 27652114
Reads aligned (%): 81.5
Duplicates removed (%): 8.4
Number of peaks: 30377 (qval < 1E-05)

Base call quality data from DBCLS SRA