Antigen

Antigen Class

TFs and others

Antigen

RBM39

Cell type

Cell type Class

Breast

Cell type

Mammary epithelial cells

NA

NA

Sample

source_name

mammary gland; derived from metastatic site: pleural effusion

cell type

Epithelial

passages

8th Passage

chip antibody

Anti-RBM39

Sequenced DNA Library

library_strategy

ChIP-Seq

library_source

GENOMIC

library_selection

ChIP

library_construction_protocol

RBM39 and MLL1 bound DNA complexes were isolated with antibody. Libraries were prepared according to Illumina's instructions.

Sequencing Platform

instrument_model

Illumina HiSeq 2000

hg38

Number of total reads

23933558

Reads aligned (%)

98.2

Duplicates removed (%)

2.7

Number of peaks

119 (qval < 1E-05)

hg19

Number of total reads

23933558

Reads aligned (%)

97.7

Duplicates removed (%)

3.8

Number of peaks

398 (qval < 1E-05)