Antigen

Antigen Class

No description

Antigen

NA

Cell type

Cell type Class

Neural

Cell type

Neural Stem Cells

MeSH Description

Self-renewing cells that generate the main phenotypes of the nervous system in both the embryo and adult. Neural stem cells are precursors to both NEURONS and NEUROGLIA.

Sample

strain

B6

age

not applicable

sex

female

tissue

not applicable

cell_type

neural stem cell

growth_protocol

Primary Neural Stem cells derived and cultured as described in Chen, K. et al. Genome-wide binding and mechanistic analyses of Smchd1-mediated epigenetic regulation. Proc. Natl Acad. Sci. USA 112, E3535–E3544 (2015)

passages

<10

replicate

1

Sequenced DNA Library

library_name

Smchd1GFP_ChIP_1

library_strategy

ChIP-Seq

library_source

GENOMIC

library_selection

ChIP

Sequencing Platform

instrument_model

NextSeq 500

mm10

Number of total reads

34068095

Reads aligned (%)

95.8

Duplicates removed (%)

8.8

Number of peaks

157 (qval < 1E-05)

mm9

Number of total reads

34068095

Reads aligned (%)

95.7

Duplicates removed (%)

8.8

Number of peaks

119 (qval < 1E-05)