SRX7627595
GSM4283792: GFP2 ChIPSeq; Caenorhabditis elegans; ChIP-Seq

Sample information curated by ChIP-Atlas

Antigen

Antigen Class
TFs and others
Antigen
GFP

Cell type

Cell type Class
Adult
Cell type
Whole worm
NA
NA

Attributes by original data submitter

Sample

source_name
whole animal
cell type
whole animal
passages
ND
strain
Bristol
chip antibody
GFP

Sequenced DNA Library

library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP
library_construction_protocol
Animal lysates were prepared following the protocol of Berkseth et al., 2013. Libraries were prepared with the kapa hyper prep kit.

Sequencing Platform

instrument_model
Illumina HiSeq 3000

Where can I get the processing logs?

Read processing pipeline log

ce11

Number of total reads
13642872
Reads aligned (%)
60.3
Duplicates removed (%)
16.9
Number of peaks
704 (qval < 1E-05)

ce10

Number of total reads
13642872
Reads aligned (%)
60.3
Duplicates removed (%)
16.9
Number of peaks
703 (qval < 1E-05)

Base call quality data from DBCLS SRA