Sample information curated by ChIP-Atlas

Antigen

Antigen Class
Histone
Antigen
H3K27ac

Cell type

Cell type Class
Adipocyte
Cell type
Brown adipocytes
NA
NA

Attributes by original data submitter

Sample

source_name
BAT
genotype/variation
Adipoq-Cre-; Ebf2 fl/fl
age
8-10 weeks
tissue
Brown adipose tissue (BAT)
temperature
RT
chip antibody
Rb anti-Histone H3 (acetyl K27) (RRID:AB_2118291)

Sequenced DNA Library

library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP
library_construction_protocol
Frozen BAT was thawed and minced in 1% formaldehyde for 20 minutes at room temperature and quenched with the addition of 2.5M glycine. BAT was sonicated in (50 mM HEPES pH7.5, 155 mM NaCl, 1 mM EDTA, 1.1% Triton X-100, 0.11% Sodium-deoxycholate, 0.1% SDS) using probe sonication (30 sec on 30 sec off, 3 times at amplitude 10 then 30 sec on 30 sec off, 3 times at amplitude 15) at 4°C (Fischer Scientific, FB705 Sonic Dismembrator). Inputs were removed, and primary antibodies were added for overnight incubation at 4°C with rotation. NEBNext Ultra II DNA Library Prep Kit for Illumina.

Sequencing Platform

instrument_model
Illumina HiSeq 4000

mm10

Number of total reads
107046411
Reads aligned (%)
98.5
Duplicates removed (%)
11.3
Number of peaks
15075 (qval < 1E-05)

mm9

Number of total reads
107046411
Reads aligned (%)
98.5
Duplicates removed (%)
11.3
Number of peaks
15049 (qval < 1E-05)

Base call quality data from DBCLS SRA