Sample information curated by ChIP-Atlas

Antigen

Antigen Class
Unclassified
Antigen
Unclassified

Cell type

Cell type Class
Pluripotent stem cell
Cell type
hESC H1
NA
NA

Attributes by original data submitter

Sample

source_name
H1 human embryonic stem cells (WA01)
tissue
H1 human embryonic stem cells (WA01)
culture
mTESRI, matrigel

Sequenced DNA Library

library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP
library_construction_protocol
Libraries were prepared according to Illumina's instructions Chromatin was prepared from fixed H1 cells sonicated with Covaris Focus ultra-sonicator and histone-DNA complexes were isolated by immunoprecipitation with anti-histones antibodies

Sequencing Platform

instrument_model
Illumina HiSeq 2500

hg38

Number of total reads
37713374
Reads aligned (%)
97.7
Duplicates removed (%)
4.6
Number of peaks
1233 (qval < 1E-05)

hg19

Number of total reads
37713374
Reads aligned (%)
97.0
Duplicates removed (%)
5.9
Number of peaks
985 (qval < 1E-05)

Base call quality data from DBCLS SRA