SRX7624159
NR2F2 ChIP-Seq of T47D breast cancer cells replicate 1

Sample information curated by ChIP-Atlas

Antigen

Antigen Class
TFs and others
Antigen
NR2F2

Cell type

Cell type Class
Breast
Cell type
T-47D
Primary Tissue
Breast
Tissue Diagnosis
Adenocarcinoma Ductal

Attributes by original data submitter

Sample

isolate
isolated from a 54 years female
age
54
biomaterial_provider
University of Debrecen, Ivan Uray
sex
female
tissue
mammary gland, breast
cell_line
T47D
cell_type
breast adenocarcinoma cells
treatment
none
replicate
biological replicate 1
antibody
NR2F2 (ARP-1)

Sequenced DNA Library

library_name
hs_T47D_NR2F2_ChIPseq_rep1
library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP

Sequencing Platform

instrument_model
NextSeq 500

Where can I get the processing logs?

Read processing pipeline log

hg38

Number of total reads
24249099
Reads aligned (%)
72.0
Duplicates removed (%)
43.1
Number of peaks
666 (qval < 1E-05)

hg19

Number of total reads
24249099
Reads aligned (%)
71.4
Duplicates removed (%)
44.3
Number of peaks
657 (qval < 1E-05)

Base call quality data from DBCLS SRA