Sample information curated by ChIP-Atlas

Antigen

Antigen Class
TFs and others
Antigen
ESR1

Cell type

Cell type Class
Breast
Cell type
MCF-7
Primary Tissue
Breast
Site of Extraction
Pleura
Tissue Diagnosis
Adenocarcinoma

Attributes by original data submitter

Sample

isolate
isolated from a 69 years female
age
69
biomaterial_provider
Sigma Aldrich
sex
female
tissue
mammary gland, breast
cell_line
MCF-7
cell_type
breast adenocarcinoma cells
treatment
none
replicate
biological replicate 1
antibody
ER alpha

Sequenced DNA Library

library_name
hs_MCF7_ESR1_ChIPseq_rep1
library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP

Sequencing Platform

instrument_model
NextSeq 500

hg19

Number of total reads
25898362
Reads aligned (%)
79.7
Duplicates removed (%)
16.7
Number of peaks
71391 (qval < 1E-05)

hg38

Number of total reads
25898362
Reads aligned (%)
80.6
Duplicates removed (%)
16.1
Number of peaks
71436 (qval < 1E-05)

Base call quality data from DBCLS SRA