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BigWig
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Peak-call (q < 1E-10)
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For mm10
Colocalization
Target Genes (TSS ± 1kb)
Target Genes (TSS ± 5kb)
Target Genes (TSS ± 10kb)
For mm9
Colocalization
Target Genes (TSS ± 1kb)
Target Genes (TSS ± 5kb)
Target Genes (TSS ± 10kb)
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For mm10
BigWig
Peak-call (q < 1E-05)
Peak-call (q < 1E-10)
Peak-call (q < 1E-20)
For mm9
BigWig
Peak-call (q < 1E-05)
Peak-call (q < 1E-10)
Peak-call (q < 1E-20)
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Sequence Read Archive
DBCLS SRA
NCBI SRA
ENA
Antigen: H3K27ac
wikigenes
PDBj
CellType: Naive T cells
ATCC
MeSH
RIKEN BRC
SRX761322
GSM1547777: Bach2 WT Th2 H3K27ac ChIP; Mus musculus; ChIP-Seq
Sample information curated by ChIP-Atlas
Antigen
Antigen Class
Histone
Antigen
H3K27ac
Cell type
Cell type Class
Blood
Cell type
Naive T cells
NA
NA
Attributes by original data submitter
Sample
source_name
Naïve CD4 T cells
strain
C57BL/6
genotype
Bach2 WT
tissue
spleen
cell type
CD4 T cells
cell cultured conditions
Th2 conditions (IL-2, IL-4, anti-IFN-g)
chip antibody
H3K27ac (Active Motif, cat#: 39133, lot#: 105)
Sequenced DNA Library
library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP
library_construction_protocol
Lysates were clarified from sonicated nuclei and transcription factor- or histone-DNA complexes were isolated with antibody. Libraries were prepared according to Illumina's instructions accompanying the ChIP Sample Prep Kit.
Sequencing Platform
instrument_model
Illumina Genome Analyzer IIx
Where can I get the processing logs?
Read processing pipeline
log
mm10
Number of total reads
23825999
Reads aligned (%)
91.9
Duplicates removed (%)
34.1
Number of peaks
26187 (qval < 1E-05)
mm9
Number of total reads
23825999
Reads aligned (%)
91.8
Duplicates removed (%)
34.2
Number of peaks
26245 (qval < 1E-05)
Base call quality data from
DBCLS SRA