Sample information curated by ChIP-Atlas

Antigen

Antigen Class
Unclassified
Antigen
Unclassified

Cell type

Cell type Class
Liver
Cell type
AML12
Tissue
Liver
Cell Type
Hepatocyte
Disease
Normal

Attributes by original data submitter

Sample

source_name
Control
cell line
AML12 cells
genotype
Control

Sequenced DNA Library

library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP
library_construction_protocol
H3K27ac ChIP was done as previously described (Wen et al., 2008) from 5×10^6 cells. Illumina sequencing library were prepared according to the standard Illumina protocol.

Sequencing Platform

instrument_model
HiSeq X Ten

mm10

Number of total reads
23568716
Reads aligned (%)
95.2
Duplicates removed (%)
15.7
Number of peaks
9465 (qval < 1E-05)

mm9

Number of total reads
23568716
Reads aligned (%)
95.1
Duplicates removed (%)
15.7
Number of peaks
9476 (qval < 1E-05)

Base call quality data from DBCLS SRA