SRX7545758
GSM4261094: KO2 Tcon; Mus musculus; ATAC-seq

Sample information curated by ChIP-Atlas

Antigen

Antigen Class
ATAC-Seq
Antigen
ATAC-Seq

Cell type

Cell type Class
Blood
Cell type
CD4+ T cells
NA
NA

Attributes by original data submitter

Sample

source_name
CD4+ Foxp3GFP– Tconv
tissue
CD4+ Foxp3GFP- Tconv
genotype
Lrrc32+ 70k enhancer KO

Sequenced DNA Library

library_strategy
ATAC-seq
library_source
GENOMIC
library_selection
other
library_construction_protocol
1e5 cell nuclei were processed as previously described (Buenrostro Nat Methods 2013; Sadiyah et al., 2019) PCR amplification with Nextera primers Buenrostro 2013

Sequencing Platform

instrument_model
Illumina HiSeq 2500

Where can I get the processing logs?

Read processing pipeline log

mm10

Number of total reads
18487205
Reads aligned (%)
93.3
Duplicates removed (%)
42.7
Number of peaks
16534 (qval < 1E-05)

mm9

Number of total reads
18487205
Reads aligned (%)
93.2
Duplicates removed (%)
42.9
Number of peaks
16516 (qval < 1E-05)

Base call quality data from DBCLS SRA