Sample information curated by ChIP-Atlas

Antigen

Antigen Class
TFs and others
Antigen
BRD4

Cell type

Cell type Class
Breast
Cell type
MCF-7
Primary Tissue
Breast
Site of Extraction
Pleura
Tissue Diagnosis
Adenocarcinoma

Attributes by original data submitter

Sample

source_name
MCF7
cell line
MCF7
cell type
human breast cancer cell line
treatment
E2 60 mins,siYTHDC1
antibody
BRD4,Bethyl,A301-985A100

Sequenced DNA Library

library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP
library_construction_protocol
Lysates were clarified from sonicated nuclei and chromatin were isolated with BRD4 antibody. DNA libraries were prepared using NEB Next Ultra II DNA library prep kit for illumina according to manufactorer's instructions

Sequencing Platform

instrument_model
NextSeq 550

hg38

Number of total reads
10093837
Reads aligned (%)
91.8
Duplicates removed (%)
29.8
Number of peaks
3143 (qval < 1E-05)

hg19

Number of total reads
10093837
Reads aligned (%)
90.7
Duplicates removed (%)
30.4
Number of peaks
3143 (qval < 1E-05)

Base call quality data from DBCLS SRA