Sample information curated by ChIP-Atlas

Antigen

Antigen Class
Histone
Antigen
H2AK119ub

Cell type

Cell type Class
Pluripotent stem cell
Cell type
ES cells
NA
NA

Attributes by original data submitter

Sample

source_name
mouse embryonic stem cell
treatment
untreated
antibodies
Cell Signaling (D27C4) #8240

Sequenced DNA Library

library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP
library_construction_protocol
For ChIP-Seq samples: phenol-chloroform extraction For ChIP-Seq samples: Libraries were prepared using the NEXTflex ChIP-Seq kit (Bio Scientific) following the “No size-selection cleanup” protocol.

Sequencing Platform

instrument_model
Illumina HiSeq 2500

mm10

Number of total reads
32432974
Reads aligned (%)
96.6
Duplicates removed (%)
9.2
Number of peaks
288 (qval < 1E-05)

mm9

Number of total reads
32432974
Reads aligned (%)
96.5
Duplicates removed (%)
9.2
Number of peaks
255 (qval < 1E-05)

Base call quality data from DBCLS SRA