SRX7528614
ATAC-seq of IPSC-dervied human control astrocytes

Sample information curated by ChIP-Atlas

Antigen

Antigen Class
ATAC-Seq
Antigen
ATAC-Seq

Cell type

Cell type Class
Pluripotent stem cell
Cell type
iPSC derived neural cells
NA
NA

Attributes by original data submitter

Sample

isolate
GM22168
age
1 day
biomaterial_provider
Coriell Institute
sex
male
tissue
Fibroblast
cell_subtype
IPSC-derived astrocytes
disease
Control
differentiation_protocol
CNTF

Sequenced DNA Library

library_name
GM22168-ATAC-seq-1
library_strategy
ATAC-seq
library_source
GENOMIC
library_selection
PCR

Sequencing Platform

instrument_model
Illumina HiSeq 4000

Where can I get the processing logs?

Read processing pipeline log

hg38

Number of total reads
59542277
Reads aligned (%)
67.9
Duplicates removed (%)
22.1
Number of peaks
52800 (qval < 1E-05)

hg19

Number of total reads
59542277
Reads aligned (%)
67.5
Duplicates removed (%)
22.5
Number of peaks
52362 (qval < 1E-05)

Base call quality data from DBCLS SRA