SRX7526504
1391 CENPA IP

Sample information curated by ChIP-Atlas

Antigen

Antigen Class
No description
Antigen
NA

Cell type

Cell type Class
Others
Cell type
Tumor
NA
NA

Attributes by original data submitter

Sample

isolate
human
age
86
biomaterial_provider
1391
sex
female
tissue
tumor
library_id
BL1391_RNAS
title
1391_RNAS
library_strategy
RNA-Seq
library_source
TRANSCRIPTOMIC
library_selection
PolyA
library_layout
paired
platform
ILLUMINA
instrument_model
NextSeq 500
design_description
This is the RNA-sequencing data of cell line BL1391
filetype
fastq
filename
BL1391_RNAS_R1_001.fastq.gz
filename2
BL1391_RNAS_R2_001.fastq.gz

Sequenced DNA Library

library_name
BL1391_CENPA_IP
library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP

Sequencing Platform

instrument_model
Illumina HiSeq 2500

Where can I get the processing logs?

Read processing pipeline log

hg38

Number of total reads
19418854
Reads aligned (%)
92.1
Duplicates removed (%)
10.4
Number of peaks
1570 (qval < 1E-05)

hg19

Number of total reads
19418854
Reads aligned (%)
90.8
Duplicates removed (%)
10.8
Number of peaks
316 (qval < 1E-05)

Base call quality data from DBCLS SRA