Antigen

Antigen Class

Histone

Antigen

H3K27ac

Cell type

Cell type Class

Digestive tract

Cell type

Colon, Sigmoid

MeSH Description

A segment of the COLON between the RECTUM and the descending colon.

Sample

sample_type

tissue

tissue

sigmoid colon

sex

male

dev_stage

adult

age

54 year

donor ID

ENCDO451RUA

lab

Bradley Bernstein, Broad

source

Kristin Ardlie

Sequenced DNA Library

library_strategy

ChIP-Seq

library_source

GENOMIC

library_selection

ChIP

library_construction_protocol

general protocol: https://www.encodeproject.org/documents/f35827f6-da4a-42a6-b4bd-9e1b8b6c1663/@@download/attachment/Epigenomics_Alternative_Mag_Bead_ChIP_Protocol_v2.0.pdf

Sequencing Platform

instrument_model

Illumina HiSeq 2500

hg38

Number of total reads

23339484

Reads aligned (%)

97.3

Duplicates removed (%)

6.9

Number of peaks

23763 (qval < 1E-05)

hg19

Number of total reads

23339484

Reads aligned (%)

96.7

Duplicates removed (%)

7.3

Number of peaks

23788 (qval < 1E-05)