SRX7509672
GSM4250731: TF ChIP-seq from transverse colon (ENCLB155CMY); Homo sapiens; ChIP-Seq

Sample information curated by ChIP-Atlas

Antigen

Antigen Class
TFs and others
Antigen
CTCF

Cell type

Cell type Class
Digestive tract
Cell type
Colon
Tissue
Colon
Lineage
Tissue
Description
Colon

Attributes by original data submitter

Sample

sample_type
tissue
tissue
transverse colon
sex
male
dev_stage
adult
age
54 year
donor ID
ENCDO451RUA
lab
Bradley Bernstein, Broad
source
Kristin Ardlie

Sequenced DNA Library

library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP
library_construction_protocol
not provided

Sequencing Platform

instrument_model
NextSeq 500

Where can I get the processing logs?

Read processing pipeline log

hg38

Number of total reads
30594447
Reads aligned (%)
97.7
Duplicates removed (%)
7.1
Number of peaks
33545 (qval < 1E-05)

hg19

Number of total reads
30594447
Reads aligned (%)
96.8
Duplicates removed (%)
7.8
Number of peaks
33425 (qval < 1E-05)

Base call quality data from DBCLS SRA