SRX7509649
GSM4250717: Histone ChIP-seq from transverse colon (ENCLB592OSR); Homo sapiens; ChIP-Seq

Sample information curated by ChIP-Atlas

Antigen

Antigen Class
Histone
Antigen
H3K4me3

Cell type

Cell type Class
Digestive tract
Cell type
Colon
Tissue
Colon
Lineage
Tissue
Description
Colon

Attributes by original data submitter

Sample

sample_type
tissue
tissue
transverse colon
sex
male
dev_stage
adult
age
37 year
donor ID
ENCDO845WKR
lab
Bradley Bernstein, Broad
source
Kristin Ardlie

Sequenced DNA Library

library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP
library_construction_protocol
not provided

Sequencing Platform

instrument_model
NextSeq 500

Where can I get the processing logs?

Read processing pipeline log

hg38

Number of total reads
14802377
Reads aligned (%)
98.5
Duplicates removed (%)
4.8
Number of peaks
22734 (qval < 1E-05)

hg19

Number of total reads
14802377
Reads aligned (%)
97.9
Duplicates removed (%)
5.3
Number of peaks
22749 (qval < 1E-05)

Base call quality data from DBCLS SRA