SRX7509646
GSM4250714: Histone ChIP-seq from transverse colon (ENCLB516EST); Homo sapiens; ChIP-Seq

Sample information curated by ChIP-Atlas

Antigen

Antigen Class
Histone
Antigen
H3K4me3

Cell type

Cell type Class
Digestive tract
Cell type
Colon
Tissue
Colon
Lineage
Tissue
Description
Colon

Attributes by original data submitter

Sample

sample_type
tissue
tissue
transverse colon
sex
male
dev_stage
adult
age
37 year
donor ID
ENCDO845WKR
lab
Bradley Bernstein, Broad
source
Kristin Ardlie

Sequenced DNA Library

library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP
library_construction_protocol
general protocol: https://www.encodeproject.org/documents/0bc735f0-1418-456c-a910-77992b868036/@@download/attachment/Bravo_ChIP_v2.0.pdf

Sequencing Platform

instrument_model
Illumina HiSeq 2500

Where can I get the processing logs?

Read processing pipeline log

hg38

Number of total reads
31853592
Reads aligned (%)
97.9
Duplicates removed (%)
4.7
Number of peaks
22055 (qval < 1E-05)

hg19

Number of total reads
31853592
Reads aligned (%)
96.8
Duplicates removed (%)
5.7
Number of peaks
21873 (qval < 1E-05)

Base call quality data from DBCLS SRA