SRX7509630
GSM4250698: Histone ChIP-seq from transverse colon (ENCLB343IDX); Homo sapiens; ChIP-Seq

Sample information curated by ChIP-Atlas

Antigen

Antigen Class
Histone
Antigen
H3K27ac

Cell type

Cell type Class
Digestive tract
Cell type
Colon
Tissue
Colon
Lineage
Tissue
Description
Colon

Attributes by original data submitter

Sample

sample_type
tissue
tissue
transverse colon
sex
female
dev_stage
adult
age
51 year
donor ID
ENCDO271OUW
lab
Bradley Bernstein, Broad
source
Kristin Ardlie

Sequenced DNA Library

library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP
library_construction_protocol
not provided

Sequencing Platform

instrument_model
NextSeq 500

Where can I get the processing logs?

Read processing pipeline log

hg38

Number of total reads
12252279
Reads aligned (%)
98.9
Duplicates removed (%)
4.3
Number of peaks
9330 (qval < 1E-05)

hg19

Number of total reads
12252279
Reads aligned (%)
98.2
Duplicates removed (%)
4.8
Number of peaks
9346 (qval < 1E-05)

Base call quality data from DBCLS SRA