SRX7509583
GSM4250651: Histone ChIP-seq from prostate gland (ENCLB084BTV); Homo sapiens; ChIP-Seq

Sample information curated by ChIP-Atlas

Antigen

Antigen Class
Histone
Antigen
H3K4me3

Cell type

Cell type Class
Prostate
Cell type
Prostate gland
NA
NA

Attributes by original data submitter

Sample

sample_type
tissue
tissue
prostate gland
sex
male
dev_stage
adult
age
54 year
donor ID
ENCDO451RUA
lab
Bradley Bernstein, Broad
source
Kristin Ardlie

Sequenced DNA Library

library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP
library_construction_protocol
general protocol: https://www.encodeproject.org/documents/0bc735f0-1418-456c-a910-77992b868036/@@download/attachment/Bravo_ChIP_v2.0.pdf

Sequencing Platform

instrument_model
Illumina HiSeq 2500

Where can I get the processing logs?

Read processing pipeline log

hg38

Number of total reads
32653355
Reads aligned (%)
95.5
Duplicates removed (%)
3.4
Number of peaks
18067 (qval < 1E-05)

hg19

Number of total reads
32653355
Reads aligned (%)
94.4
Duplicates removed (%)
4.3
Number of peaks
18004 (qval < 1E-05)

Base call quality data from DBCLS SRA