Antigen

Antigen Class

TFs and others

Antigen

CTCF

Cell type

Cell type Class

Uterus

Cell type

Uterus

MeSH Description

The hollow thick-walled muscular organ in the female PELVIS. It consists of the fundus (the body) which is the site of EMBRYO IMPLANTATION and FETAL DEVELOPMENT. Beyond the isthmus at the perineal end of fundus, is CERVIX UTERI (the neck) opening into VAGINA. Beyond the isthmi at the upper abdominal end of fundus, are the FALLOPIAN TUBES.

Sample

sample_type

tissue

tissue

uterus

sex

female

dev_stage

adult

age

53 year

donor ID

ENCDO793LXB

lab

Bradley Bernstein, Broad

source

Kristin Ardlie

Sequenced DNA Library

library_strategy

ChIP-Seq

library_source

GENOMIC

library_selection

ChIP

library_construction_protocol

general protocol: https://www.encodeproject.org/documents/be2a0f12-af38-430c-8f2d-57953baab5f5/@@download/attachment/Epigenomics_Alternative_Mag_Bead_ChIP_Protocol_v1.1_exp.pdf

Sequencing Platform

instrument_model

Illumina HiSeq 2500

hg38

Number of total reads

18017673

Reads aligned (%)

95.5

Duplicates removed (%)

3.3

Number of peaks

13190 (qval < 1E-05)

hg19

Number of total reads

18017673

Reads aligned (%)

94.5

Duplicates removed (%)

4.2

Number of peaks

13079 (qval < 1E-05)