SRX7509538
GSM4250574: Control ChIP-seq from transverse colon (ENCLB165HAI); Homo sapiens; ChIP-Seq

Sample information curated by ChIP-Atlas

Antigen

Antigen Class
Input control
Antigen
Input control

Cell type

Cell type Class
Digestive tract
Cell type
Colon
Tissue
Colon
Lineage
Tissue
Description
Colon

Attributes by original data submitter

Sample

sample_type
tissue
tissue
transverse colon
sex
male
dev_stage
adult
age
54 year
donor ID
ENCDO451RUA
lab
Bradley Bernstein, Broad
source
Kristin Ardlie

Sequenced DNA Library

library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP
library_construction_protocol
general protocol: https://www.encodeproject.org/documents/0bc735f0-1418-456c-a910-77992b868036/@@download/attachment/Bravo_ChIP_v2.0.pdf

Sequencing Platform

instrument_model
Illumina HiSeq 2500

Where can I get the processing logs?

Read processing pipeline log

hg38

Number of total reads
38171743
Reads aligned (%)
97.2
Duplicates removed (%)
3.5
Number of peaks
1086 (qval < 1E-05)

hg19

Number of total reads
38171743
Reads aligned (%)
96.1
Duplicates removed (%)
4.6
Number of peaks
1046 (qval < 1E-05)

Base call quality data from DBCLS SRA