Antigen

Antigen Class

Histone

Antigen

H3K9me3

Cell type

Cell type Class

Uterus

Cell type

Vagina

MeSH Description

The genital canal in the female, extending from the UTERUS to the VULVA. (Stedman, 25th ed)

Sample

sample_type

tissue

tissue

vagina

sex

female

dev_stage

adult

age

51 year

donor ID

ENCDO271OUW

lab

Bradley Bernstein, Broad

source

Kristin Ardlie

Sequenced DNA Library

library_strategy

ChIP-Seq

library_source

GENOMIC

library_selection

ChIP

library_construction_protocol

general protocol: https://www.encodeproject.org/documents/be2a0f12-af38-430c-8f2d-57953baab5f5/@@download/attachment/Epigenomics_Alternative_Mag_Bead_ChIP_Protocol_v1.1_exp.pdf

Sequencing Platform

instrument_model

Illumina HiSeq 2500

hg38

Number of total reads

27184336

Reads aligned (%)

97.7

Duplicates removed (%)

6.9

Number of peaks

1680 (qval < 1E-05)

hg19

Number of total reads

27184336

Reads aligned (%)

95.7

Duplicates removed (%)

9.2

Number of peaks

1126 (qval < 1E-05)