Antigen

Antigen Class

Histone

Antigen

H3K9me3

Cell type

Cell type Class

Others

Cell type

Thyroid Gland

MeSH Description

A highly vascularized endocrine gland consisting of two lobes joined by a thin band of tissue with one lobe on each side of the TRACHEA. It secretes THYROID HORMONES from the follicular cells and CALCITONIN from the parafollicular cells thereby regulating METABOLISM and CALCIUM level in blood, respectively.

Sample

sample_type

tissue

tissue

thyroid gland

sex

female

dev_stage

adult

age

51 year

donor ID

ENCDO271OUW

lab

Bradley Bernstein, Broad

source

Kristin Ardlie

Sequenced DNA Library

library_strategy

ChIP-Seq

library_source

GENOMIC

library_selection

ChIP

library_construction_protocol

general protocol: https://www.encodeproject.org/documents/0bc735f0-1418-456c-a910-77992b868036/@@download/attachment/Bravo_ChIP_v2.0.pdf

Sequencing Platform

instrument_model

Illumina HiSeq 2500

hg38

Number of total reads

35905061

Reads aligned (%)

97.8

Duplicates removed (%)

19.4

Number of peaks

1436 (qval < 1E-05)

hg19

Number of total reads

35905061

Reads aligned (%)

96.4

Duplicates removed (%)

21.0

Number of peaks

1017 (qval < 1E-05)