SRX7509455
GSM4248074: Histone ChIP-seq from transverse colon (ENCLB180PAL); Homo sapiens; ChIP-Seq

Sample information curated by ChIP-Atlas

Antigen

Antigen Class
Histone
Antigen
H3K4me1

Cell type

Cell type Class
Digestive tract
Cell type
Colon
Tissue
Colon
Lineage
Tissue
Description
Colon

Attributes by original data submitter

Sample

sample_type
tissue
tissue
transverse colon
sex
male
dev_stage
adult
age
37 year
donor ID
ENCDO845WKR
lab
Bradley Bernstein, Broad
source
Kristin Ardlie

Sequenced DNA Library

library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP
library_construction_protocol
not provided

Sequencing Platform

instrument_model
Illumina HiSeq 2500

Where can I get the processing logs?

Read processing pipeline log

hg38

Number of total reads
25305774
Reads aligned (%)
97.8
Duplicates removed (%)
1.8
Number of peaks
539 (qval < 1E-05)

hg19

Number of total reads
25305774
Reads aligned (%)
97.3
Duplicates removed (%)
2.2
Number of peaks
613 (qval < 1E-05)

Base call quality data from DBCLS SRA