SRX7509445
GSM4247554: Histone ChIP-seq from transverse colon (ENCLB286YVE); Homo sapiens; ChIP-Seq

Sample information curated by ChIP-Atlas

Antigen

Antigen Class
Histone
Antigen
H3K4me1

Cell type

Cell type Class
Digestive tract
Cell type
Colon
Tissue
Colon
Lineage
Tissue
Description
Colon

Attributes by original data submitter

Sample

sample_type
tissue
tissue
transverse colon
sex
female
dev_stage
adult
age
51 year
donor ID
ENCDO271OUW
lab
Bradley Bernstein, Broad
source
Kristin Ardlie

Sequenced DNA Library

library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP
library_construction_protocol
not provided

Sequencing Platform

instrument_model
Illumina HiSeq 2500

Where can I get the processing logs?

Read processing pipeline log

hg38

Number of total reads
21324587
Reads aligned (%)
98.0
Duplicates removed (%)
1.8
Number of peaks
707 (qval < 1E-05)

hg19

Number of total reads
21324587
Reads aligned (%)
97.0
Duplicates removed (%)
2.6
Number of peaks
616 (qval < 1E-05)

Base call quality data from DBCLS SRA