Antigen

Antigen Class

Histone

Antigen

H3K9me3

Cell type

Cell type Class

Gonad

Cell type

Ovary

MeSH Description

The reproductive organ (GONADS) in female animals. In vertebrates, the ovary contains two functional parts: the OVARIAN FOLLICLE for the production of female germ cells (OOGENESIS); and the endocrine cells (GRANULOSA CELLS; THECA CELLS; and LUTEAL CELLS) for the production of ESTROGENS and PROGESTERONE.

Sample

sample type

tissue

tissue

ovary

sex

female

dev stage

adult

age

53 year

donor ID

ENCDO793LXB

lab

Bradley Bernstein, Broad

source

Kristin Ardlie

Sequenced DNA Library

library_strategy

ChIP-Seq

library_source

GENOMIC

library_selection

ChIP

library_construction_protocol

general protocol: https://www.encodeproject.org/documents/0bc735f0-1418-456c-a910-77992b868036/@@download/attachment/Bravo_ChIP_v2.0.pdf

Sequencing Platform

instrument_model

Illumina HiSeq 2500

hg38

Number of total reads

32195190

Reads aligned (%)

96.2

Duplicates removed (%)

8.9

Number of peaks

1356 (qval < 1E-05)

hg19

Number of total reads

32195190

Reads aligned (%)

94.7

Duplicates removed (%)

10.2

Number of peaks

1038 (qval < 1E-05)