Antigen

Antigen Class

Histone

Antigen

H3K27me3

Cell type

Cell type Class

Digestive tract

Cell type

Stomach

MeSH Description

An organ of digestion situated in the left upper quadrant of the abdomen between the termination of the ESOPHAGUS and the beginning of the DUODENUM.

Sample

sample_type

tissue

tissue

stomach

sex

female

dev_stage

adult

age

51 year

donor ID

ENCDO271OUW

lab

Bradley Bernstein, Broad

source

Kristin Ardlie

Sequenced DNA Library

library_strategy

ChIP-Seq

library_source

GENOMIC

library_selection

ChIP

library_construction_protocol

general protocol: https://www.encodeproject.org/documents/be2a0f12-af38-430c-8f2d-57953baab5f5/@@download/attachment/Epigenomics_Alternative_Mag_Bead_ChIP_Protocol_v1.1_exp.pdf

Sequencing Platform

instrument_model

Illumina HiSeq 2500

hg38

Number of total reads

62040246

Reads aligned (%)

98.1

Duplicates removed (%)

3.4

Number of peaks

1991 (qval < 1E-05)

hg19

Number of total reads

62040246

Reads aligned (%)

97.1

Duplicates removed (%)

4.8

Number of peaks

1317 (qval < 1E-05)