SRX7509321
GSM4247324: Histone ChIP-seq from gastrocnemius medialis (ENCLB171KSP); Homo sapiens; ChIP-Seq

Sample information curated by ChIP-Atlas

Antigen

Antigen Class
Histone
Antigen
H3K9me3

Cell type

Cell type Class
Muscle
Cell type
Gastrocnemius medialis
NA
NA

Attributes by original data submitter

Sample

sample_type
tissue
tissue
gastrocnemius medialis
sex
female
dev_stage
adult
age
51 year
donor ID
ENCDO271OUW
lab
Bradley Bernstein, Broad
source
Kristin Ardlie

Sequenced DNA Library

library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP
library_construction_protocol
not provided

Sequencing Platform

instrument_model
Illumina HiSeq 2500

Where can I get the processing logs?

Read processing pipeline log

hg38

Number of total reads
41022791
Reads aligned (%)
93.1
Duplicates removed (%)
5.2
Number of peaks
1686 (qval < 1E-05)

hg19

Number of total reads
41022791
Reads aligned (%)
91.7
Duplicates removed (%)
6.7
Number of peaks
1136 (qval < 1E-05)

Base call quality data from DBCLS SRA