Antigen

Antigen Class

Histone

Antigen

H3K4me1

Cell type

Cell type Class

Digestive tract

Cell type

Colon, Sigmoid

MeSH Description

A segment of the COLON between the RECTUM and the descending colon.

Sample

sample_type

tissue

tissue

sigmoid colon

sex

female

dev_stage

adult

age

51 year

donor ID

ENCDO271OUW

lab

Bradley Bernstein, Broad

source

Kristin Ardlie

Sequenced DNA Library

library_strategy

ChIP-Seq

library_source

GENOMIC

library_selection

ChIP

library_construction_protocol

general protocol: https://www.encodeproject.org/documents/be2a0f12-af38-430c-8f2d-57953baab5f5/@@download/attachment/Epigenomics_Alternative_Mag_Bead_ChIP_Protocol_v1.1_exp.pdf

Sequencing Platform

instrument_model

Illumina HiSeq 2500

hg38

Number of total reads

35118212

Reads aligned (%)

98.1

Duplicates removed (%)

4.2

Number of peaks

1135 (qval < 1E-05)

hg19

Number of total reads

35118212

Reads aligned (%)

97.5

Duplicates removed (%)

4.8

Number of peaks

1232 (qval < 1E-05)