SRX7509238
GSM4247241: Histone ChIP-seq from esophagus squamous epithelium (ENCLB241ZZW); Homo sapiens; ChIP-Seq

Sample information curated by ChIP-Atlas

Antigen

Antigen Class
Histone
Antigen
H3K9me3

Cell type

Cell type Class
Digestive tract
Cell type
Esophagus squamous epithelium
NA
NA

Attributes by original data submitter

Sample

sample_type
tissue
tissue
esophagus squamous epithelium
sex
female
dev_stage
adult
age
51 year
donor ID
ENCDO271OUW
lab
Bradley Bernstein, Broad
source
Kristin Ardlie

Sequenced DNA Library

library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP
library_construction_protocol
general protocol: https://www.encodeproject.org/documents/0bc735f0-1418-456c-a910-77992b868036/@@download/attachment/Bravo_ChIP_v2.0.pdf

Sequencing Platform

instrument_model
Illumina HiSeq 2500

Where can I get the processing logs?

Read processing pipeline log

hg38

Number of total reads
41063985
Reads aligned (%)
96.8
Duplicates removed (%)
4.9
Number of peaks
2397 (qval < 1E-05)

hg19

Number of total reads
41063985
Reads aligned (%)
95.0
Duplicates removed (%)
7.3
Number of peaks
1474 (qval < 1E-05)

Base call quality data from DBCLS SRA