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Install and launch IGV before selecting data to visualize
For hg38
BigWig
Peak-call (q < 1E-05)
Peak-call (q < 1E-10)
Peak-call (q < 1E-20)
For hg19
BigWig
Peak-call (q < 1E-05)
Peak-call (q < 1E-10)
Peak-call (q < 1E-20)
Error connecting to IGV?
Analyze
For hg38
Colocalization
Target Genes (TSS ± 1kb)
Target Genes (TSS ± 5kb)
Target Genes (TSS ± 10kb)
For hg19
Colocalization
Target Genes (TSS ± 1kb)
Target Genes (TSS ± 5kb)
Target Genes (TSS ± 10kb)
Download
For hg38
BigWig
Peak-call (q < 1E-05)
Peak-call (q < 1E-10)
Peak-call (q < 1E-20)
For hg19
BigWig
Peak-call (q < 1E-05)
Peak-call (q < 1E-10)
Peak-call (q < 1E-20)
Link Out
Sequence Read Archive
DBCLS SRA
NCBI SRA
ENA
Antigen: H3K9me3
wikigenes
PDBj
CellType: Colon
ATCC
MeSH
RIKEN BRC
Variation
TogoVar
SRX7509222
GSM4247225: Histone ChIP-seq from transverse colon (ENCLB532TVC); Homo sapiens; ChIP-Seq
Sample information curated by ChIP-Atlas
Antigen
Antigen Class
Histone
Antigen
H3K9me3
Cell type
Cell type Class
Digestive tract
Cell type
Colon
Tissue
Colon
Lineage
Tissue
Description
Colon
Attributes by original data submitter
Sample
sample_type
tissue
tissue
transverse colon
sex
male
dev_stage
adult
age
37 year
donor ID
ENCDO845WKR
lab
Bradley Bernstein, Broad
source
Kristin Ardlie
Sequenced DNA Library
library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP
library_construction_protocol
not provided
Sequencing Platform
instrument_model
Illumina HiSeq 2500
Where can I get the processing logs?
Read processing pipeline
log
hg38
Number of total reads
21533332
Reads aligned (%)
96.7
Duplicates removed (%)
5.6
Number of peaks
1502 (qval < 1E-05)
hg19
Number of total reads
21533332
Reads aligned (%)
94.2
Duplicates removed (%)
8.1
Number of peaks
1265 (qval < 1E-05)
Base call quality data from
DBCLS SRA