Sample information curated by ChIP-Atlas

Antigen

Antigen Class
RNA polymerase
Antigen
RNA polymerase II

Cell type

Cell type Class
Lung
Cell type
WI-38
Primary Tissue
Lung
Tissue Diagnosis
Normal

Attributes by original data submitter

Sample

source_name
Human Embryonic Lung Fibroblasts
gender
female
cell line
WI38
cell type
Normal Cells
antibody
Santa Cruz; sc-9001; H-224

Sequenced DNA Library

library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP
library_construction_protocol
Phenol/chlorophrom extraction was used for gDNA isolation. Standard Illumina protocols are followed. ChIP-seq: Bioo Scientific NEXTflex kit is used (Catalog: 514120, 48 reactions) ChIP-seq: Libraries were prepared according to the standard Illumina protocol and sequenced with the HiSeq2500 system. Single end sequencing was carried out to obtain around 25-150 million (M), 100bp long reads per sample.

Sequencing Platform

instrument_model
Illumina HiSeq 2500

hg38

Number of total reads
112501086
Reads aligned (%)
97.7
Duplicates removed (%)
83.5
Number of peaks
15574 (qval < 1E-05)

hg19

Number of total reads
112501086
Reads aligned (%)
97.1
Duplicates removed (%)
84.5
Number of peaks
14784 (qval < 1E-05)

Base call quality data from DBCLS SRA