Antigen

Antigen Class

Input control

Antigen

Input control

Cell type

Cell type Class

Liver

Cell type

Liver

MeSH Description

A large lobed glandular organ in the abdomen of vertebrates that is responsible for detoxification, metabolism, synthesis and storage of various substances.

Sample

source_name

liver

tissue

liver

strain

C57BL/6J

chip antibody

none

genotype

wildtype

Sequenced DNA Library

library_strategy

ChIP-Seq

library_source

GENOMIC

library_selection

ChIP

library_construction_protocol

Kapa Biosystems library prep kit Livers were collected after 6 hour refeeding and processed for either total RNA extraction for RNA-seq, or nuclei extraction for ChIP and ATAC-seq. Libraries were prepared by the genome sequencing facility following manufacturers instructions for either the Kapa Biosystems or Nextera library prep kits.

Sequencing Platform

instrument_model

Illumina HiSeq 4000

mm10

Number of total reads

39181250

Reads aligned (%)

98.9

Duplicates removed (%)

16.7

Number of peaks

504 (qval < 1E-05)

mm9

Number of total reads

39181250

Reads aligned (%)

98.7

Duplicates removed (%)

16.8

Number of peaks

521 (qval < 1E-05)