Sample information curated by ChIP-Atlas

Antigen

Antigen Class
Input control
Antigen
Input control

Cell type

Cell type Class
Blood
Cell type
Pro-B cells
NA
NA

Attributes by original data submitter

Sample

source_name
v-Abl transformed pro-B cell line
genotype
Emu-Bcl2, RAG2 deficient
treatment
3 uM STI-571 treated for 4 days
antibody
none

Sequenced DNA Library

library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP
library_construction_protocol
Crosslinked cells were treated with cell lysis buffer (5mM PIPES pH 8, 85mM KCl, 0.5% NP-40) and nuclei lysis buffer (50mM TrisCl pH 8.1, 10mM EDTA, 1% SDS) and subjected to sonication. IP and Input DNA were de-crosslinked at 65o overnight and purified via Qiagen PCR purification columns. ChIP-Seq libraries were prepared using NEBNext Ultra II DNA Library Prep Kit (NEB, #E7645)

Sequencing Platform

instrument_model
NextSeq 550

mm10

Number of total reads
65060323
Reads aligned (%)
97.8
Duplicates removed (%)
16.4
Number of peaks
428 (qval < 1E-05)

mm9

Number of total reads
65060323
Reads aligned (%)
97.6
Duplicates removed (%)
16.7
Number of peaks
471 (qval < 1E-05)

Base call quality data from DBCLS SRA