SRX7478524
GSM4238537: CLL PT1 CD19neg scATACseq; Homo sapiens; ATAC-seq

Sample information curated by ChIP-Atlas

Antigen

Antigen Class
ATAC-Seq
Antigen
ATAC-Seq

Cell type

Cell type Class
Blood
Cell type
Peripheral blood mononuclear cells
NA
NA

Attributes by original data submitter

Sample

source_name
CLL_CD19neg_scATACseq
subject status
chronic lymphocytic leukemia patient
subject id
Patient 1
cell type
Peripherial blood mononuclear cells
enrichment
CD19 negative

Sequenced DNA Library

library_strategy
ATAC-seq
library_source
GENOMIC
library_selection
other
library_construction_protocol
NP40 lysis, see method sections for full details Custom 10x Genomics scATAC-seq (mtscATAC-seq)

Sequencing Platform

instrument_model
NextSeq 550

Where can I get the processing logs?

Read processing pipeline log

hg38

Number of total reads
388928852
Reads aligned (%)
93.1
Duplicates removed (%)
0.1
Number of peaks
1872 (qval < 1E-05)

hg19

Number of total reads
388928852
Reads aligned (%)
92.8
Duplicates removed (%)
0.1
Number of peaks
1885 (qval < 1E-05)

Base call quality data from DBCLS SRA