SRX747784
GSM1534729: ChIP-seq p65 Vehicle rep2; Homo sapiens; ChIP-Seq

Sample information curated by ChIP-Atlas

Antigen

Antigen Class
TFs and others
Antigen
RELA

Cell type

Cell type Class
Breast
Cell type
MCF-7
Primary Tissue
Breast
Site of Extraction
Pleura
Tissue Diagnosis
Adenocarcinoma

Attributes by original data submitter

Sample

source_name
ChIP-seq_p65_Vehicle
cell line
MCF-7
cell type
ER Positive Breast Cancer Cells
treatment
Vehicle
chip antibody
p65 (Abcam ab7970)

Sequenced DNA Library

library_name
ERROR: cannot retrieve data from NCBI: too many requests
library_strategy
ERROR: cannot retrieve data from NCBI: too many requests
library_source
ERROR: cannot retrieve data from NCBI: too many requests
library_selection
ERROR: cannot retrieve data from NCBI: too many requests
library_construction_protocol
ERROR: cannot retrieve data from NCBI: too many requests

Sequencing Platform

instrument_model
ERROR: cannot retrieve data from NCBI: too many requests
cycle_sequence
ERROR: cannot retrieve data from NCBI: too many requests
cycle_count
ERROR: cannot retrieve data from NCBI: too many requests
flow_sequence
ERROR: cannot retrieve data from NCBI: too many requests
flow_count
ERROR: cannot retrieve data from NCBI: too many requests
key_sequence
ERROR: cannot retrieve data from NCBI: too many requests

Where can I get the processing logs?

Read processing pipeline log

hg38

Number of total reads
24686852
Reads aligned (%)
90.8
Duplicates removed (%)
59.8
Number of peaks
652 (qval < 1E-05)

hg19

Number of total reads
24686852
Reads aligned (%)
90.0
Duplicates removed (%)
61.0
Number of peaks
623 (qval < 1E-05)

Base call quality data from DBCLS SRA