SRX7438453
GSM4232268: Doc5 pos rep1; Mus musculus; ATAC-seq

Sample information curated by ChIP-Atlas

Antigen

Antigen Class
ATAC-Seq
Antigen
ATAC-Seq

Cell type

Cell type Class
Blood
Cell type
T cells
NA
NA

Attributes by original data submitter

Sample

source_name
ID3pos_Docile_day5
Sex
male
tissue
spleen
cell type
ID3GFP+ P14 T cells
infection
LCMV Docile
time
day5

Sequenced DNA Library

library_strategy
ATAC-seq
library_source
GENOMIC
library_selection
other
library_construction_protocol
DNA was extracted using cell lysis buffer as described previously (Buenrostro, et al 2013) Libraries were generated following the protocol as described previously (Buenrostro, et al 2013)

Sequencing Platform

instrument_model
NextSeq 500

Where can I get the processing logs?

Read processing pipeline log

mm10

Number of total reads
28521047
Reads aligned (%)
84.1
Duplicates removed (%)
20.6
Number of peaks
22512 (qval < 1E-05)

mm9

Number of total reads
28521047
Reads aligned (%)
84.0
Duplicates removed (%)
20.6
Number of peaks
22467 (qval < 1E-05)

Base call quality data from DBCLS SRA