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Install and launch IGV before selecting data to visualize
For mm10
BigWig
Peak-call (q < 1E-05)
Peak-call (q < 1E-10)
Peak-call (q < 1E-20)
For mm9
BigWig
Peak-call (q < 1E-05)
Peak-call (q < 1E-10)
Peak-call (q < 1E-20)
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Analyze
For mm10
Colocalization
Target Genes (TSS ± 1kb)
Target Genes (TSS ± 5kb)
Target Genes (TSS ± 10kb)
For mm9
Colocalization
Target Genes (TSS ± 1kb)
Target Genes (TSS ± 5kb)
Target Genes (TSS ± 10kb)
Download
For mm10
BigWig
Peak-call (q < 1E-05)
Peak-call (q < 1E-10)
Peak-call (q < 1E-20)
For mm9
BigWig
Peak-call (q < 1E-05)
Peak-call (q < 1E-10)
Peak-call (q < 1E-20)
Link Out
Sequence Read Archive
DBCLS SRA
NCBI SRA
ENA
Antigen: ATAC-Seq
wikigenes
PDBj
CellType: T cells
ATCC
MeSH
RIKEN BRC
SRX7438449
GSM4232264: Doc21 pos rep1; Mus musculus; ATAC-seq
Sample information curated by ChIP-Atlas
Antigen
Antigen Class
ATAC-Seq
Antigen
ATAC-Seq
Cell type
Cell type Class
Blood
Cell type
T cells
NA
NA
Attributes by original data submitter
Sample
source_name
ID3pos_Docile_day21
Sex
male
tissue
spleen
cell type
ID3GFP+ P14 T cells
infection
LCMV Docile
time
day21
Sequenced DNA Library
library_strategy
ATAC-seq
library_source
GENOMIC
library_selection
other
library_construction_protocol
DNA was extracted using cell lysis buffer as described previously (Buenrostro, et al 2013) Libraries were generated following the protocol as described previously (Buenrostro, et al 2013)
Sequencing Platform
instrument_model
NextSeq 500
Where can I get the processing logs?
Read processing pipeline
log
mm10
Number of total reads
33517959
Reads aligned (%)
80.7
Duplicates removed (%)
41.6
Number of peaks
22707 (qval < 1E-05)
mm9
Number of total reads
33517959
Reads aligned (%)
80.6
Duplicates removed (%)
41.6
Number of peaks
22666 (qval < 1E-05)
Base call quality data from
DBCLS SRA