SRX7427136
GSM4230109: ChIP-seq CUTLL1 SMC3 rep2; Homo sapiens; ChIP-Seq

Sample information curated by ChIP-Atlas

Antigen

Antigen Class
TFs and others
Antigen
SMC3

Cell type

Cell type Class
Blood
Cell type
CUTLL1
NA
NA

Attributes by original data submitter

Sample

source_name
ChIP-seq_CUTLL1_SMC3
cell type
CUTLL1
antibody
SMC3

Sequenced DNA Library

library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP
library_construction_protocol
1% formaldehyde crosslinking for 10 minutes and nuclei isolated and sonicated with Qsonica Q500 micro tip Illumina TruSeq DNA sample library prep kit

Sequencing Platform

instrument_model
NextSeq 500

Where can I get the processing logs?

Read processing pipeline log

hg38

Number of total reads
40778194
Reads aligned (%)
99.1
Duplicates removed (%)
4.2
Number of peaks
20483 (qval < 1E-05)

hg19

Number of total reads
40778194
Reads aligned (%)
98.3
Duplicates removed (%)
5.2
Number of peaks
20324 (qval < 1E-05)

Base call quality data from DBCLS SRA