SRX7412214
ATAC-seq of ethanol treated colon organoids

Sample information curated by ChIP-Atlas

Antigen

Antigen Class
ATAC-Seq
Antigen
ATAC-Seq

Cell type

Cell type Class
Digestive tract
Cell type
Colonic organoids
NA
NA

Attributes by original data submitter

Sample

isolate
colon organoid
age
53
biomaterial_provider
Casey
sex
male
tissue
proximal colon organoid
health_state
Healthy
population
North America
race
Caucasian
sample_type
ATAC
treatment
Control

Sequenced DNA Library

library_name
VM0016
library_strategy
ATAC-seq
library_source
GENOMIC
library_selection
other

Sequencing Platform

instrument_model
Illumina HiSeq 4000

Where can I get the processing logs?

Read processing pipeline log

hg38

Number of total reads
54922829
Reads aligned (%)
31.4
Duplicates removed (%)
47.1
Number of peaks
10410 (qval < 1E-05)

hg19

Number of total reads
54922829
Reads aligned (%)
31.2
Duplicates removed (%)
47.6
Number of peaks
10334 (qval < 1E-05)

Base call quality data from DBCLS SRA