Sample information curated by ChIP-Atlas

Antigen

Antigen Class
Unclassified
Antigen
Unclassified

Cell type

Cell type Class
Lung
Cell type
A549
Primary Tissue
Lung
Tissue Diagnosis
Carcinoma

Attributes by original data submitter

Sample

source_name
A549 CELLS
cell line
A549
cell type
lung adenocarcinoma cells
passages
3 to 5
ip reagent
α-BG4; Mouse monoclonal (Abosolute biology)

Sequenced DNA Library

library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP
library_construction_protocol
Lysates were clarified from sonicated nuclei. ARP-tagged DNA was isolated with Streptavidin and DNA-protein complexes were isolated with antibody. The library was made using New England Biolabs NEB Next Ultra II DNA Library Prep Kit. High-throughput sequencing was conducted at the UNMC Sequencing Core, using an Illumina HiSeq 2500 Genome Analyzer.

Sequencing Platform

instrument_model
Illumina HiSeq 2500

hg38

Number of total reads
32808810
Reads aligned (%)
89.1
Duplicates removed (%)
4.9
Number of peaks
1156 (qval < 1E-05)

hg19

Number of total reads
32808810
Reads aligned (%)
88.6
Duplicates removed (%)
5.4
Number of peaks
1100 (qval < 1E-05)

Base call quality data from DBCLS SRA